PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016468900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 1223aa    MW: 137026 Da    PI: 9.2468
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016468900.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.001611071132123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                      y C    C++sFs+k +L  H ++ +
  XP_016468900.1 1107 YHCDleGCSMSFSTKQELSLHKKNvC 1132
                      889999***************99866 PP

2zf-C2H2110.001311311154223
                      EET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2    2 kCp..dCgksFsrksnLkrHirtH 23  
                      +Cp   C+k F ++ +L++H r+H
  XP_016468900.1 1131 VCPveGCKKKFFSHKYLVQHRRVH 1154
                      69999*****************99 PP

3zf-C2H212.20.0005611901216123
                      EEET..TTTEEESSHHHHHHHHHH..T CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                      y+C+   Cg++F+  s++ rH r+  H
  XP_016468900.1 1190 YVCTesGCGQTFRFVSDFSRHKRKtgH 1216
                      99********************99666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005453.6E-161960IPR003349JmjN domain
PROSITE profilePS5118314.9912061IPR003349JmjN domain
PfamPF023752.1E-152154IPR003349JmjN domain
SMARTSM005583.6E-39180348IPR003347JmjC domain
PROSITE profilePS5118426.069180347IPR003347JmjC domain
SuperFamilySSF511976.04E-21194322No hitNo description
PfamPF023736.4E-33213322IPR003347JmjC domain
SMARTSM003551111071129IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.5E-511281158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.81E-511301167No hitNo description
PROSITE profilePS5015711.57211301159IPR007087Zinc finger, C2H2
SMARTSM003550.01211301154IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028011321154IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-811591184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.74111601189IPR007087Zinc finger, C2H2
SMARTSM003550.001411601184IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028011621184IPR007087Zinc finger, C2H2
SuperFamilySSF576672.78E-911701212No hitNo description
Gene3DG3DSA:3.30.160.601.9E-911851213IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.90711901221IPR007087Zinc finger, C2H2
SMARTSM003550.1611901216IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028011921216IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1223 aa     Download sequence    Send to blast
MAEASGNIEV FPWLKTLPVA PEYHPTLEEF QDPIAYIFKI EKEASKYGIC KIVPPVPAPP  60
KKTALAYLNR SLSARSGSNG GPTFTTRQQQ IGFCPRKHRP VKKPVWQSGE NYTVQEFQAK  120
AKAFEKNYLK KNFKKALTSP LEIETLYWKA TVDKPFSVEY ANDMPGSAFA PKKVGNAVTT  180
LADTEWNMRG VSRAKGSLLK FMKEEIPGVT SPMVYLAMMF SWFAWHVEDH DLHSLNYLHM  240
GAGKTWYGVP RDAAVAFEEV IRVHGYAGET NPLVTFATLG EKTTVMSPEV LLSAGIPCCR  300
LVQNAGDFVI TFPRAYHSGF SHVAKDAAIR RASINCPPMV SHFQLLYDLA LSLCSRVPKN  360
TRIEPRSSRL KDKKKSEGDM LVKELFVEDL NCNNYLLHIL GEGSPVVLLP QHYSGISIGS  420
NSVAGSQLKV NSRFPSISSP DHEVKSKTDS ASDALMLGRK QRMKQLASVS LEKGKHSSWH  480
AGNRLPESGR DEAESSPETE RGNLDPARGL TYRCDTLSEH GLFSCVTCGI LCYTCVAIIQ  540
PTEAAAHHLM SSDYRNFNDW TGNVGGVTAT SRDDAAESDS SSGWLVKRAP GGLIDVSIES  600
SDRIRKLNNE RVGVLSSTKA RKETSSLSLL ALNYANSSDS DEDEVEANIP VEACESRHMD  660
FEDEVSLRVI DPYANHRQRR AVSDGRNCQS LDNSIHLESE NPPPGESNTL PDRSRHQLRS  720
HQVGANCIPF SHRGEIANSD RVAPFDNGPM QFTSTSDEDS FRIHVFCLQH AVQIEEQLRQ  780
VGGVHISLLC HPDYPKLEAQ AKKMAEELGR DHFWREISFR EATKEDEEMI QSALEVEEAI  840
HGNGDWTVKL DINLFYSANL SRSPLYSKQM PCNFIIYNAF GRSSPDEKSE YTGTGRGSGK  900
QKRAVVAGKW CGKVWMSSQV HPLLAERRDT DEEQQQNNNI ISTRVKPEVK SERPCEMTPT  960
GKTVARTGKK RKSRVENKRN SKLLIADDSS VSDVPQQQRK TNLRSKRIKY ETPEPKEEDV  1020
DKKKRIGSPI NDDPDGGPST RLRKRMLKPS KESLVKSRPA PIKQQNESKK AEKGSKVKIP  1080
SANSNSKKDP VMKANTSKKM KDKEGEYHCD LEGCSMSFST KQELSLHKKN VCPVEGCKKK  1140
FFSHKYLVQH RRVHMDDRPL KCPWKGCKMT FKWAWARTEH IRVHTGARPY VCTESGCGQT  1200
FRFVSDFSRH KRKTGHISKK GRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4igo_A6e-471632112348Os05g0196500 protein
4igp_A6e-471632112348Os05g0196500 protein
4igq_A6e-471632112348Os05g0196500 protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016468900.10.0PREDICTED: lysine-specific demethylase REF6-like isoform X2
SwissprotQ9STM30.0REF6_ARATH; Lysine-specific demethylase REF6
TrEMBLM1B7Y20.0M1B7Y2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000392240.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6